Publications 100+

Publacitions having more than 100 citations.

2016

  1. Gawande MB, Goswami A, Felpin F, Asefa T, Huang X, Silva R, Zou X, Zbořil R, Varma RS: Cu and Cu-Based Nanoparticles: Synthesis and Applications in Catalysis. Chem. Rev., 116(6), 3722–3811, 2016. (DOI)
  2. Georgakilas V, Tiwari JN, Kemp KC, Perman JA, Bourlinos AB, Kim KS, Zbořil R: Noncovalent Functionalization of Graphene and Graphene Oxide for Energy Materials, Biosensing, Catalytic, and Biomedical Applications. Chem. Rev., 116(9), 5464–5519, 2016. (DOI)
  3. Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li J, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S: Tools and data services registry: a community effort to document bioinformatics resources. Nucl. Acids Res., 44(D1), D38-D47, 2016. (DOI)
  4. Ulbrich K, Holá K, Šubr V, Bakandritsos A, Tuček J, Zbořil R: Targeted Drug Delivery with Polymers and Magnetic Nanoparticles: Covalent and Noncovalent Approaches, Release Control, and Clinical Studies. Chem. Rev., 116(9), 5338–5431, 2016. (DOI)

2015

  1. Gawande MB, Goswami A, Asefa T, Guo H, Biradar AV, Peng D, Zbořil R, Varma RS: Core–shell nanoparticles: synthesis and applications in catalysis and electrocatalysis. Chem. Soc. Rev., 44(21), 7540-7590, 2015. (DOI)
  2. Georgakilas V, Perman JA, Tuček J, Zbořil R: Broad Family of Carbon Nanoallotropes: Classification, Chemistry, and Applications of Fullerenes, Carbon Dots, Nanotubes, Graphene, Nanodiamonds, and Combined Superstructures. Chem. Rev., 115(11), 4744-4822, 2015. (DOI)

2014

  1. de Beer TAP, Berka K, Thornton JM, Laskowski RA: PDBsum additions. Nucleic Acids Res., 42(D1), 292-296, 2014. (DOI)
  2. Gawande MB, Shelke SN, Zbořil R, Varma RS: Microwave-Assisted Chemistry: Synthetic Applications for Rapid Assembly of Nanomaterials and Organics. Acc. Chem. Res., 47(4), 1338-1348, 2014. (DOI)
  3. Holá K, Bourlinos AB, Kozák O, Berka K, Siskova KM, Havrdova M, Tuček J, Šafářová K, Otyepka M, Giannelis EP, Zbořil R: Photoluminescence effects of graphitic core size and surface functional groups in carbon dots: COO− induced red-shift emission. Carbon, 70, 279-286, 2014. (DOI)
  4. Holá K, Zhang Y, Wang Y, Giannelis EP, Zbořil R, Rogach AL: Carbon dots—Emerging light emitters for bioimaging, cancer therapy and optoelectronics. Nano Today, 9(5), 590-603, 2014. (DOI)
  5. Sharma VK, Šišková KM, Zbořil R, Gardea-Torresdey JL: Organic-coated silver nanoparticles in biological and environmental conditions: Fate, stability and toxicity. Adv. Colloid Interface Sci., 204, 15-34, 2014. (DOI)

2013

  1. Karlický F, Kumara Ramanatha Datta K, Otyepka M, Zbořil R: Halogenated Graphenes: Rapidly Growing Family of Graphene Derivatives. ACS Nano, 7(8), 6434-6464, 2013. (DOI)
  2. Lazar P, Karlický F, Jurečka P, Kocman M, Otyepková E, Šafářová K, Otyepka M: Adsorption of Small Organic Molecules on Graphene. J. Am. Chem. Soc., 135(16), 6372-6377, 2013. (DOI)
  3. Řezáč J, Hobza P: Describing Noncovalent Interactions beyond the Common Approximations: How Accurate Is the “Gold Standard,” CCSD(T) at the Complete Basis Set Limit?. J. Chem. Theory Comput., 9(5), 2151-2155, 2013. (DOI)
  4. Sehnal D, Svobodová Vařeková R, Berka K, Pravda L, Navrátilová V, Banáš P, Ionescu C, Otyepka M, Koča J: MOLE 2.0: advanced approach for analysis of biomacromolecular channels. J. Cheminf., 5(1), 1-39, 2013. (DOI)

2012

  1. Berka K, Hanák O, Sehnal D, Banáš P, Navrátilová V, Jaiswal D, Ionescu CM, Svobodová Vařekova R, Koča J, Otyepka M: MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels. Nucleic Acids Res., 40(W1), W222-W227, 2012. (DOI)
  2. Georgakilas V, Otyepka M, Bourlinos AB, Chandra V, Kim N, Kemp KC, Hobza P, Zbořil R, Kim KS: Functionalization of Graphene: Covalent and Non-Covalent Approaches, Derivatives and Applications. Chem. Rev., 112(11), 6156-6214, 2012. (DOI)
  3. Hobza P: Calculations on Noncovalent Interactions and Databases of Benchmark Interaction Energies. Acc. Chem. Res., 45(4), 663-672, 2012. (DOI)
  4. Košinová P, Berka K, Wykes M, Otyepka M, Trouillas P: Positioning of Antioxidant Quercetin and Its Metabolites in Lipid Bilayer Membranes: Implication for Their Lipid-Peroxidation Inhibition. J. Phys. Chem. B, 116(4), 1309-1318, 2012. (DOI)

2011

  1. Berka K, Hendrychová T, Anzenbacher P, Otyepka M: Membrane Position of Ibuprofen Agrees with Suggested Access Path Entrance to Cytochrome P450 2C9 Active Site. J. Phys. Chem. A, 115(41), 11248-11255, 2011. (DOI)
  2. Dallas P, Sharma VK, Zbořil R: Silver polymeric nanocomposites as advanced antimicrobial agents: Classification, synthetic paths, applications, and perspectives. Adv. Colloid Interface Sci., 166(1-2), 119-135, 2011. (DOI)
  3. Machala L, Tuček J, Zbořil R: Polymorphous Transformations of Nanometric Iron(III) Oxide: A Review. Chem. Mater., 23(14), 3255-3272, 2011. (DOI)
  4. Prucek R, Tuček J, Kilianová M, Panáček A, Kvítek L, Filip J, Kolář M, Tománková K, Zbořil R: The targeted antibacterial and antifungal properties of magnetic nanocomposite of iron oxide and silver nanoparticles. Biomaterials, 32(21), 4704-4713, 2011. (DOI)
  5. Řezáč J, Riley KE, Hobza P: S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures. J. Chem. Theory Comput., 7(8), 2427-2438, 2011. (DOI)
  6. Zgarbová M, Otyepka M, Šponer J, Mládek A, Banáš P, Cheatham TE, Jurečka P: Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles. J. Chem. Theory Comput., 7(9), 2886-2902, 2011. (DOI)

2010

  1. Banáš P, Hollas D, Zgarbová M, Jurečka P, Orozco M, Cheatham TE, Šponer J, Otyepka M: Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins. J. Chem. Theory Comput., 6(12), 3836-3849, 2010. (DOI)
  2. Ditzler MA, Otyepka M, Šponer J, Walter NG: Molecular Dynamics and Quantum Mechanics of RNA: Conformational and Chemical Change We Can Believe In. Acc. Chem. Res., 43(1), 40-47, 2010. (DOI)
  3. Georgakilas V, Bourlinos AB, Zbořil R, Steriotis TA, Dallas P, Stubos AK, Trapalis C: Organic functionalisation of graphenes. Chem. Commun., 46(10), 1766-1768, 2010. (DOI)
  4. Gráfová L, Pitoňák M, Řezáč J, Hobza P: Comparative Study of Selected Wave Function and Density Functional Methods for Noncovalent Interaction Energy Calculations Using the Extended S22 Data Set. J. Chem. Theory Comput., 6(8), 2365-2376, 2010. (DOI)
  5. Kalbáčová M, Brož A, Kong J, Kalbáč M: Graphene substrates promote adherence of human osteoblasts and mesenchymal stromal cells. Carbon, 48(15), 4323-4329, 2010. (DOI)
  6. Korth M, Pitoňák M, Řezáč J, Hobza P: A Transferable H-Bonding Correction for Semiempirical Quantum-Chemical Methods. J. Chem. Theory Comput., 6(1), 344-352, 2010. (DOI)
  7. Riley KE, Pitoňák M, Černý J, Hobza P: On the Structure and Geometry of Biomolecular Binding Motifs (Hydrogen-Bonding, Stacking, X−H···pi): WFT and DFT Calculations. J. Chem. Theory Comput., 6(1), 66-80, 2010. (DOI)
  8. Riley KE, Pitoňák M, Jurečka P, Hobza P: Stabilization and Structure Calculations for Noncovalent Interactions in Extended Molecular Systems Based on Wave Function and Density Functional Theories. Chem. Rev., 110(9), 5023-5063, 2010. (DOI)
  9. Sivula K, Zbořil R, Le Formal F, Robert R, Weidenkaff A, Tuček J, Frydrych J, Grätzel M: Photoelectrochemical Water Splitting with Mesoporous Hematite Prepared by a Solution-Based Colloidal Approach. J. Am. Chem. Soc., 132(21), 7436-7444, 2010. (DOI)

2009

  1. Bourlinos AB, Georgakilas V, Zbořil R, Steriotis TA, Stubos AK: Liquid-Phase Exfoliation of Graphite Towards Solubilized Graphenes. Small, 5(16), 1841-1845, 2009. (DOI)
  2. Bourlinos AB, Georgakilas V, Zbořil R, Steriotis TA, Stubos AK, Trapalis C: Aqueous-phase exfoliation of graphite in the presence of polyvinylpyrrolidone for the production of water-soluble graphenes. Solid State Commun., 149(47-48), 2172-2176, 2009. (DOI)
  3. Cesar I, Sivula K, Kay A, Zbořil R, Grätzel M: Influence of Feature Size, Film Thickness, and Silicon Doping on the Performance of Nanostructured Hematite Photoanodes for Solar Water Splitting. J. Phys. Chem. C, 113(2), 772-782, 2009. (DOI)
  4. Panáček A, Kolář M, Večeřová R, Prucek R, Soukupová J, Kryštof V, Hamal P, Zbořil R, Kvítek L: Antifungal activity of silver nanoparticles against Candida spp. Biomaterials, 30(31), 6333-6340, 2009. (DOI)
  5. Pavlová M, Klvana M, Prokop Z, Chaloupková R, Banáš P, Otyepka M, Wade RC, Tsuda M, Nagata Y, Damborský J: Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate. Nat. Chem. Biol., 5(10), 727-733, 2009. (DOI)
  6. Řezáč J, Fanfrlík J, Salahub D, Hobza P: Semiempirical Quantum Chemical PM6 Method Augmented by Dispersion and H-Bonding Correction Terms Reliably Describes Various Types of Noncovalent Complexes. J. Chem. Theory Comput., 5(7), 1749-1760, 2009. (DOI)
  7. Riley KE, Murray JS, Politzer P, Concha MC, Hobza P: Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone. J. Chem. Theory Comput., 5(1), 155-163, 2009. (DOI)

2008

  1. Bourlinos AB, Stassinopoulos A, Anglos D, Zbořil R, Georgakilas V, Giannelis EP: Photoluminescent Carbogenic Dots. Chem. Mater., 20(14), 4539-4541, 2008. (DOI)
  2. Bourlinos AB, Stassinopoulos A, Anglos D, Zbořil R, Karakassides M, Giannelis EP: Surface Functionalized Carbogenic Quantum Dots. Small, 4(4), 455-458, 2008. (DOI)
  3. Kvítek L, Panáček A, Soukupová J, Kolář M, Večeřová R, Prucek R, Holecová M, Zbořil R: Effect of Surfactants and Polymers on Stability and Antibacterial Activity of Silver Nanoparticles (NPs). J. Phys. Chem. C, 112(15), 5825-5834, 2008. (DOI)
  4. Pitoňák M, Neogrády P, Řezáč J, Jurečka P, Urban M, Hobza P: Benzene Dimer: High-Level Wave Function and Density Functional Theory Calculations. J. Chem. Theory Comput., 4(11), 1829-1834, 2008. (DOI)
  5. Řezáč J, Jurečka P, Riley KE, Černý J, Valdes H, Pluháčková K, Berka K, Řezáč T, Pitoňák M, Vondrášek J, Hobza P: Quantum Chemical Benchmark Energy and Geometry Database for Molecular Clusters and Complex Molecular Systems (www.begdb.com): A Users Manual and Examples. Collect. Czech. Chem. Commun., 73(10), 1261-1270, 2008. (DOI)

2007

  1. Heřmánek M, Zbořil R, Medřík I, Pechoušek J, Gregor Č: Catalytic Efficiency of Iron(III) Oxides in Decomposition of Hydrogen Peroxide: Competition between the Surface Area and Crystallinity of Nanoparticles. J. Am. Chem. Soc., 129(35), 10929-10936, 2007. (DOI)
  2. Jurečka P, Černý J, Hobza P, Salahub DR: Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared with ab initio quantum mechanics calculations. J. Comput. Chem., 28(2), 555-569, 2007. (DOI)
  3. Machala L, Zbořil R, Gedanken A: Amorphous Iron(III) OxideA Review. J. Phys. Chem. B, 111(16), 4003-4018, 2007. (DOI)
  4. Petřek M, Košinová P, Koča J, Otyepka M: MOLE: A Voronoi Diagram-Based Explorer of Molecular Channels, Pores, and Tunnels. Structure, 15(11), 1357-1363, 2007. (DOI)

2006

  1. Panáček A, Kvítek L, Prucek R, Kolář M, Večeřová R, Pizúrová N, Sharma VK, Nevěčná T, Zbořil R: Silver Colloid Nanoparticles: Synthesis, Characterization, and Their Antibacterial Activity. J. Phys. Chem. B, 110(33), 16248-16253, 2006. (DOI)
  2. Petřek M, Otyepka M, Banáš P, Košinová P, Koča J, Damborský J: CAVER: a new tool to explore routes from protein clefts, pockets and cavities. BMC Bioinf., 7(1), 316, 2006. (DOI)

2005

  1. Kvítek L, Prucek R, Panáček A, Novotný R, Hrbáč J, Zbořil R: The influence of complexing agent concentration on particle size in the process of SERS active silver colloid synthesis. J. Mater. Chem., 15(10), 1099-1105, 2005. (DOI)

2002

  1. Zbořil R, Mašláň M, Petridis D: Iron(III) Oxides from Thermal ProcessesSynthesis, Structural and Magnetic Properties, Mössbauer Spectroscopy Characterization, and Applications. Chem. Mater., 14(3), 969-982, 2002. (DOI)