Topics of diploma theses

Theoretic diploma theses

Study of structure and structural dynamics of SAM-III riboswitch. doc. Mgr. Pavel Banáš, Ph.D.
Study of structure and structural dynamics of glmS riboswitch. doc. Mgr. Pavel Banáš, Ph.D.
Interactions of substances with biological membranes. doc. RNDr. Karel Berka, Ph.D.
Machine learning analysis of tunnels in proteins. doc. RNDr. Karel Berka, Ph.D.
Interconnection of chemical databases using a graphical representation of data. doc. RNDr. Karel Berka, Ph.D.
Prototyping of chemical database. doc. RNDr. Karel Berka, Ph.D.
Molecular visualization of the ligand in the protein cavity. doc. RNDr. Karel Berka, Ph.D.
2D visualization of a tunnel in a protein. doc. RNDr. Karel Berka, Ph.D.
Atlas of chemistry. doc. RNDr. Karel Berka, Ph.D.
Modifications to increase permeability through membranes. doc. RNDr. Karel Berka, Ph.D.
Transition-metal nanoclusters adsorption on freestanding and supported defective graphene – towards atomic-scale magnetic information storage. Piotr Błoński, Ph.D.
Role of Solid Substrates for Magnetic Anisotropy of Small Metallic Clusters on Defective Graphene. Piotr Błoński, Ph.D.
Empirical potentials for molecular dynamics simulations of DNA and RNA. doc. RNDr. Petr Jurečka, Ph.D.
Molecular dynamics simulations of conserved motifs in non-coding RNA. doc. RNDr. Petr Jurečka, Ph.D.
Database and theoretical studies of non-canonical nucleic acids motifs. doc. RNDr. Petr Jurečka, Ph.D.
Protein-DNA interactions. doc. RNDr. Petr Jurečka, Ph.D.
Study of hydrogen evolution reaction for doped MoB2. Mgr. Petr Lazar, Ph.D.
Simulation of Raman spectroscopy as a tool for structural identification of new nanomaterials. Mgr. Petr Lazar, Ph.D.
Study of structure and structural dynamics of guanine sensing riboswitch. Mgr. Petra Kührová, Ph.D.
Study of structure and structural dynamics of preQ riboswitch. Mgr. Petra Kührová, Ph.D.
Design of new non-linear optical materials based on graphene. doc. RNDr. Miroslav Medveď, Ph.D.
Nature of interaction of molecules with 2D materials. prof. RNDr. Michal Otyepka, Ph.D.
Study of the unusual nucleic acid backbone substates in protein-DNA complexes. Mgr. Marie Zgarbová, Ph.D.
The effect of empirical potential on the structural dynamics of DNA. Mgr. Marie Zgarbová, Ph.D.

Experimental diploma theses

Synthesis and characterization of graphene derivatives doped with single metal atoms. Dr. Aristeidis Bakandritsos
Advanced surface modification of iron nanoparticles for enhanced reactivity and mobility. Mgr. Jan Filip, Ph.D.
Adsorption of organic molecules on 2D materials. prof. RNDr. Michal Otyepka, Ph.D.
Mechanical and surface properties of powder materials. prof. RNDr. Michal Otyepka, Ph.D.
Synthesis of nanoparticles and nanocomposite materials based on noble metals for catalytical applications. doc. RNDr. Aleš Panáček, Ph.D.
Synthesis of silver nanoparticles and silver based nanocomposite materials for biological applications. doc. RNDr. Aleš Panáček, Ph.D.
Preparation of substrates for surface enhance Raman spectroscopy. doc. RNDr. Robert Prucek, Ph.D.
Application of iron based materials for water treatment. doc. RNDr. Robert Prucek, Ph.D.
Preparation of Biodegradable Polymer Fibres via Electrospinning Process and Their Functionalization. RNDr. Jana Soukupová, Ph.D.
Preparation of Inert Polymer Fibres via Electrospinning Process and Their Functionalization. RNDr. Jana Soukupová, Ph.D.
Preparation of Different Structures of Polymer Fibres Using Electrospinning. RNDr. Jana Soukupová, Ph.D.
Role of mineral catalysis in the production of formic acid and other related prebiotic building blocks under simulated early Earth conditions. Juri Ugolotti, Ph.D. and Judit Šponer, Ph.D.